PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g024940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 346aa    MW: 38373.6 Da    PI: 8.59
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g024940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.56.2e-0557743855
                    TS-HHHHHHHHHHHHHHH CS
        Homeobox 38 gLterqVkvWFqNrRake 55
                     ++ +q+ +WFqNrR+  
  Csa15g024940.1 57 VVQFKQIWNWFQNRRYAL 74
                    56779**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0067781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-51879IPR009057Homeodomain-like
SuperFamilySSF466892.4E-81978IPR009057Homeodomain-like
PfamPF167192.0E-41139266IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFILPEVN EMEAILLQHN TAMPGRHILE ALADKFSESP ERKGKIVVQF  60
KQIWNWFQNR RYALRARGNK APGKLNVSSM PRMDLPNQMR NVMQPLAAPK TTHMTGNLPG  120
MTPAPSVPGV MRSGSDNSYL EFEAKSARDG AWYDVQAFLA HRNLEIGDPE VQVRFAGFEV  180
EEDEWINVKK HVRQRSLPCE ASECVAVLAG DLVLCFQEGK DQALYFDATV LDAQRRRHDV  240
RGCRCRFLVR YSHDQSEEIV PLRKICRRPE TDYRLQQLHN VVNDLANLNQ HQIPALDAAA  300
KTSLSQSGAS VPIVAPEPKD RSLSTTPATS VQPSSNAAAV PAGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-471402704134SHH1 SAWADEE
4iur_B3e-471402704134SHH1 SAWADEE
4iut_A3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465934.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X4
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLR0HZD80.0R0HZD8_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__2039__AT3G18380.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding